SNP Profiles of ICS 43   View Data

 Show/Hide Profiles

 Key

 1234567891011121314
_Input profile
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
1._ICS_43
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
2._GC-01-051-3-06
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
3._GC-01-051-3-06
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
4._GC-01-051-3-06
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
5._GC-01-051-3-06
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
6._GC-01-051-3-06
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
7._GC-01-051-3-06
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
8._GC-01-051-3-06
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
9._GC-01-051-3-06
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
10._GC-01-051-3-06
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
11._GC-01-051-3-06
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
12._ICS_43
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
13._ICS_43
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
14._ICS_43
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
15._ICS_43
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
16._ICS_43
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
17._ICS_43
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
18._ICS_43
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
19._ICS_43
CCGGCCCCTTTTTTCCCCAAGGCCGGCC
20._ICS43
__CC________CT_CT
21._RUQ_144
CTAGGGCTTTCCGTCTCTAA_CTAACT
22._ICS_43
CTAGGGCTTTCCGTCTCTAAAACTAACT
23._RUQ_144
_AGGGCT__GT____CTAA_
24._RUQ_144
__GG___GT_CT_AA_AA_
25._RUQ_144
AGAGCCAGAAGGAA__AAAAAGAAAG
26._ICS_43_Fld#_164_Plt#_1
AGAGCCAGAAGGAA__AAAAAGAAAG
 1516171819202122232425262728
_Input profile
AAGGCCCCGGGGAACCCCCCGGCCAAGG
1._ICS_43
AAGGCCCCGGGGAACCCCCCGGCCAAGG
2._GC-01-051-3-06
AAGGCCCCGGGGAACCCCCCGGCCAAGG
3._GC-01-051-3-06
AAGGCCCCGGGGAACCCCCCGGCCAAGG
4._GC-01-051-3-06
AAGGCCCCGGGGAACCCCCCGGCCAAGG
5._GC-01-051-3-06
AAGGCCCCGGGGAACCCCCCGGCCAAGG
6._GC-01-051-3-06
AAGGCCCCGGGGAACCCCCCGGCCAAGG
7._GC-01-051-3-06
AAGGCCCCGGGGAACCCCCCGGCCAAGG
8._GC-01-051-3-06
AAGGCCCCGGGGAACCCCCCGGCCAAGG
9._GC-01-051-3-06
AAGGCCCCGGGGAACCCCCCGGCCAAGG
10._GC-01-051-3-06
AAGGCCCCGGGGAACCCCCCGGCCAAGG
11._GC-01-051-3-06
AAGGCCCCGGGGAACCCCCCGGCCAAGG
12._ICS_43
AAGGCCCCGGGGAACCCCCCGGCCAAGG
13._ICS_43
AAGGCCCCGGGGAACCCCCCGGCCAAGG
14._ICS_43
AAGGCCCCGGGGAACCCCCCGGCCAAGG
15._ICS_43
AAGGCCCCGGGGAACCCCCCGGCCAAGG
16._ICS_43
AAGGCCCCGGGGAACCCCCCGGCCAAGG
17._ICS_43
AAGGCCCCGGGGAACCCCCCGGCCAAGG
18._ICS_43
AAGGCCCCGGGGAACCCCCCGGCCAAGG
19._ICS_43
AAGGCCCCGGGGAACCCCCCGGCCAAGG
20._ICS43
___CCCC___AACC____
21._RUQ_144
AAGGTTCCGGGTAGTTAACCTTTTCCAG
22._ICS_43
AAGGTTCCGGGTAGTTAACCTTTTCCAG
23._RUQ_144
___CCGGGT_TTAACCTTTTCC_
24._RUQ_144
____GGGTAG_AACC__CC_
25._RUQ_144
AAGGAAGGCCAC_AAAACCAA_CCGG
26._ICS_43_Fld#_164_Plt#_1
AAGGAAGGCCAC_AAAACCAA_CCGG
 293031323334353637     
_Input profile
AACCCCAATTTTAAAAGGX_XX_XX_XX_XX_X
1._ICS_43
AACCCCAATTTTAAAAGGX_XX_XX_XX_XX_X
2._GC-01-051-3-06
AACCCCAATTTTAAAAGGX_XX_XX_XX_XX_X
3._GC-01-051-3-06
AACCCCAATTTTAAAAGGX_XX_XX_XX_XX_X
4._GC-01-051-3-06
AACCCCAATTTTAAAAGGX_XX_XX_XX_XX_X
5._GC-01-051-3-06
AACCCCAATTTTAAAAGGX_XX_XX_XX_XX_X
6._GC-01-051-3-06
AACCCCAATTTTAAAAGGX_XX_XX_XX_XX_X
7._GC-01-051-3-06
AACCCCAATTTTAAAAGGX_XX_XX_XX_XX_X
8._GC-01-051-3-06
AACCCCAATTTTAAAAGGX_XX_XX_XX_XX_X
9._GC-01-051-3-06
AACCCCAATTTTAAAAGGX_XX_XX_XX_XX_X
10._GC-01-051-3-06
AACCCCAATTTTAAAAGGX_XX_XX_XX_XX_X
11._GC-01-051-3-06
AACCCCAATTTTAAAAGGX_XX_XX_XX_XX_X
12._ICS_43
AACCCCAATTTTAAAAGGX_XX_XX_XX_XX_X
13._ICS_43
AACCCCAATTTTAAAAGGX_XX_XX_XX_XX_X
14._ICS_43
AACCCCAATTTTAAAAGGX_XX_XX_XX_XX_X
15._ICS_43
AACCCCAATTTTAAAAGGX_XX_XX_XX_XX_X
16._ICS_43
AACCCCAATTTTAAAAGGX_XX_XX_XX_XX_X
17._ICS_43
AACCCCAATTTTAAAAGGX_XX_XX_XX_XX_X
18._ICS_43
AACCCCAATTTTAAAAGGX_XX_XX_XX_XX_X
19._ICS_43
AACCCCAATTTTAAAAGGX_XX_XX_XX_XX_X
20._ICS43
AA_CGACCT_AC__X_XX_XX_XX_XX_X
21._RUQ_144
AACTCGACCTGTACTTGGX_XX_XX_XX_XX_X
22._ICS_43
AACT_ACCTGTACTTGGX_XX_XX_XX_XX_X
23._RUQ_144
AACTCGACCTGTAC__X_XX_XX_XX_XX_X
24._RUQ_144
______AC__X_XX_XX_XX_XX_X
25._RUQ_144
AAAGCGACAGACACTTGGX_XX_XX_XX_XX_X
26._ICS_43_Fld#_164_Plt#_1
AAAGCGACAGACACTTGGX_XX_XX_XX_XX_X

Input profile: ICS_43

 
 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1306 3
 Dapeng Zhang, 2016

1._ICS_43

identical
37 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1306 2
 Dapeng Zhang, 2016

2._ICS_43 GC-01-051-3-06

identical
37 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

3._ICS_43 GC-01-051-3-06

identical
37 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9 > FP1
 Mars, 2018

4._ICS_43 GC-01-051-3-06

identical
37 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8 > FP3
 Mars, 2018

5._ICS_43 GC-01-051-3-06

identical
37 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

6._ICS_43 GC-01-051-3-06

identical
37 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

7._ICS_43 GC-01-051-3-06

identical
37 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

8._ICS_43 GC-01-051-3-06

identical
37 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

9._ICS_43 GC-01-051-3-06

identical
37 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14
 Mars, 2018

10._ICS_43 GC-01-051-3-06

identical
37 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 15
Notes: 15
 Mars, 2018

11._ICS_43 GC-01-051-3-06

identical
37 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

12._ICS_43

identical
37 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1306 1
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

13._ICS_43

identical
37 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1306 2
 Dapeng Zhang, 2016

14._ICS_43

identical
37 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1306 4
 Dapeng Zhang, 2016

15._ICS_43

identical
37 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1306 12
 Dapeng Zhang, 2016

16._ICS_43

identical
37 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1306 14
 Dapeng Zhang, 2016

17._ICS_43

identical
37 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1306 15
 Dapeng Zhang, 2016

18._ICS_43

identical
37 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1306 8 > FP
 Dapeng Zhang, 2016

19._ICS_43

identical
37 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1306 9 > FP
 Dapeng Zhang, 2016

20._ICS_43 ICS43

58.3 %
12 shared markers

 View  View all  Clone  Any
Center for Forestry Research and Technology Transfer, Vietnam
Location: CEFORTT
 Jocelyn De Wever et al., 2019

21._ICS_43 RUQ_144

48.6 %
36 shared markers

 View  View all  Clone  Any
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

22._ICS_43

47.2 %
36 shared markers

 View  View all  Clone  Any
International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: San Juan Block3
 Dapeng Zhang, 2016

23._ICS_43 RUQ_144

43.2 %
22 shared markers

 View  View all  Clone  Any
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

24._ICS_43 RUQ_144

37.5 %
12 shared markers

 View  View all  Clone  Any
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

25._ICS_43 RUQ_144

30.3 %
33 shared markers

 View  View all  Clone  Any
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

26._ICS_43 ICS_43_Fld#_164_Plt#_1

30.3 %
33 shared markers

 View  View all  Clone  Any
USDA-TARS, United States of America
Location: Field: 164, Tree: 1
 Mars, 2018

 

  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1270 7TcSNP1253 8TcSNP1165 9TcSNP1144 10TcSNP1075
11TcSNP1062 12TcSNP1060 13TcSNP998 14TcSNP994 15TcSNP953
16TcSNP929 17TcSNP917 18TcSNP891 19TcSNP872 20TcSNP723
21TcSNP645 22TcSNP619 23TcSNP591 24TcSNP577 25TcSNP560
26TcSNP534 27TcSNP529 28TcSNP429 29TcSNP372 30TcSNP242
31TcSNP226 32TcSNP193 33TcSNP151 34TcSNP150 35TcSNP144
36TcSNP32 37TcSNP25